This guide lists steps you should consider taking when setting up your Android phone (or device). However, before implementing below changes, it is strongly recommended that you read How to use mobile phones as securely as possible and How to use smartphones as securely as possible. Those two guides will help you make informed decisions about what you store on your Android device and how you communicate with it.
REQUIRED READING:
2.2 ADDITIONAL ANDROID APPS FOR NON-ROOTED DEVICES
Along with the software covered by our Tools Guides for Android, we also suggest the following apps.

License: Commercial / Requirements: Dependant on device.
Details: Allows you to password protect apps on your phone so that they can not be run with out entering the correct passphrase. For example protect your Mail app with additional passphrase.

License: Commercial / Requirements: Android 2.2 and up.
Details: Anti-Virus software that will scan your phone for malicious apps and files. It will also allow you to locate your phone if lost.

License: Proprietary / Requirements: Android 4.0.3 and up.
Details: An anti-theft solution that will allow you to locate your phone if lost or stolen. It will also allow you to remotely lock or wipe the contents of your phone.

License: FOSS / Requirements: Dependant on device
Details: brings the experience of Firefox Browser for the desktop to your mobile phone.

License: FOSS (Apache v2) / Requirements: Android 3.0 and up.
Details: A note taking application that stores all notes in an encrypted container protected by a passphrase.

License: FOSS (GPL v2) / Requirements: Android 4.0 and up.
Details: Allows you to tunnel your apps, that connect to the internet, over OpenVPN based VPNs, protecting you from monitoring.

License: FOSS (GPL v3) / Requirements: Android 2.3.3 and up.
Details: Allows you to secretly trigger your phone to send an SMS letting a predefined list of contacts know you may be in danger.

License: FOSS (GPL v3) / Requirements: Dependant on device.
Details: helps you to try and circumvent censorship and monitoring by tunneling your internet connection over a number of different encrypted tunnel types such as VPNs and Proxies.

License: Proprietary / Requirements: Dependant on device.
Details: is a file synchronisation tool that will allow you to easily share files between your computers and Android devices via an intermediary 3rd party server on the internet. All files are encrypted by the app before being uploaded to the Spideroak servers.

License: FOSS (GPL v3+) / Requirements: Android 2.3.3 and up.
Details: an secure messaging app that provides end to end encryption for all messages and files sent. No personal details (phone, email) are required for registration.
2.3 ADDITIONAL ANDROID APPS FOR ROOTED DEVICES
The following apps are for advanced users of Android and require your phone to be rooted.

License: FOSS (GPL v3) / Requirements: Android 2.2 and up.
Details: A firewall for your android device that allows you to control what apps can access the internet.

License: FOSS (Apache v2) / Requirements: Android 3.0 and up.
Details: lets you to change your Android disk encryption password meaning you can have a one passphrase to decrypt the phone when you turn it on and a different one to unlock the phone during normal use.

License: FOSS (GPL v2) / Requirements: Android 2.2 and up.
Details: allows you to create encrypted, passphrase protected, containers on your Android device that you can store sensitive files in.

License: FOSS (GPL v3) / Requirements: Android 4.1 - 4.4 and only specific handsets.
Details: is an Android app that collects and analyses mobile radio data to make you aware of your mobile network security and to warn you about threats like fake base stations (IMSI catchers), user tracking and over-the-air updates.

License: FOSS (GPL v3) / Requirements: Android 4.0.3 and up.
Details: is an app that will prevent your Android device from leaking sensitive information (such as your phone number, contacts, location, etc) to other installed apps on your phone. While x-privacy is free, there is a Pro version that can be purchased, which allows you to download restriction rules rather than you having to make them your self.
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